📌Overview

Purpose: To provide an MCP server that enables programmatic management and interaction with Jupyter notebooks.

Overview: The mcp-server-jupyter facilitates the manipulation and execution of Jupyter notebooks through a set of defined tools. This framework streamlines workflows for developers and data scientists, enabling efficient notebook handling directly from a server.

Key Features:

• Read Notebooks with Outputs: Allows users to retrieve entire notebook content, including cell outputs, which is vital for full notebook analysis.

• Read Notebook Source Only: Provides a way to read the notebook's content without outputs to mitigate size issues, ensuring flexibility in handling large notebooks.

• Cell Manipulation: Users can add new cells, edit existing ones, and execute specific cells to obtain outputs. This feature is crucial for iterative development and testing within notebooks.

• Integration with Claude Desktop: Seamlessly integrates with Claude Desktop, allowing users to configure and run notebooks efficiently within their development environment.

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mcp-server-jupyter

An MCP server for managing and interacting with Jupyter notebooks programmatically.

Components

Tools

The server provides six tools for notebook manipulation:

1. read_notebook_with_outputs: Read a notebook's content including cell outputs

   • Required: notebook_path (string)

2. read_notebook_source_only: Read notebook content without outputs

   • Required: notebook_path (string)
   • Use when size limitations prevent reading full notebook with outputs

3. read_output_of_cell: Read output of a specific cell

   • Required:
     • notebook_path (string)
     • cell_id (string)

4. add_cell: Add new cell to notebook

   • Required:
     • notebook_path (string)
     • source (string)
   • Optional:
     • cell_type (string): "code" or "markdown"
     • position (integer): insertion index (-1 to append)

5. edit_cell: Modify existing cell content

   • Required:
     • notebook_path (string)
     • cell_id (string)
     • source (string)

6. execute_cell: Execute a specific cell and return its output

   • Required:
     • notebook_path (string)
     • cell_id (string)

Usage with Claude Desktop

Step 1: Start JupyterLab or Jupyter Notebook

Using uv to run Jupyter notebooks makes it easier to manage virtual environments and package installations.

Follow uv jupyter documentation for details.

uv venv --seed
source .venv/bin/activate
uv pip install jupyterlab
.venv/bin/jupyter lab

Note: This environment should be used as UV_PROJECT_ENVIRONMENT environment variable in MCP server. Run in the same folder where Jupyter is started.

echo $(pwd)/.venv

Step 2: Configure Claude Desktop

Add this configuration to your Claude Desktop config file:

PyPi package:

{
  "mcpServers": {
    "Jupyter-notebook-manager": {
      "command": "uv",
      "args": ["run", "--with", "mcp-server-jupyter", "mcp-server-jupyter"],
      "env": {
        "UV_PROJECT_ENVIRONMENT": "/path/to/venv_for_jupyter/.venv"
      }
    }
  }
}

Git repo fork:

{
  "mcpServers": {
    "Jupyter-notebook-manager": {
      "command": "uv",
      "args": [
        "run",
        "--directory",
        "/Users/inna/mcp-server-jupyter/src/mcp_server_jupyter",
        "mcp-server-jupyter"
      ],
      "env": {
        "UV_PROJECT_ENVIRONMENT": "/path/to/venv_for_jupyter/.venv"
      }
    }
  }
}

Step 3: Open Notebook & Claude Chat

Open or create a notebook in JupyterLab or Jupyter Notebook.

Get the full path to your notebook:

• In JupyterLab: Right-click on the notebook in the file browser → Copy Path
• In Jupyter Notebook: Copy the path from the URL (modify to full system path)

In Claude Desktop chat:

• Always use the full path to the notebook when calling tools.
• Example: /Users/username/projects/my_notebook.ipynb

Important Notes:

• After any modifications through Claude (add_cell, edit_cell), reload the notebook page in JupyterLab/Jupyter Notebook because the current version does not support automatic reload.
• Keep the JupyterLab/Jupyter Notebook instance running while working with Claude.

License

This project is licensed under the MIT License. See the LICENSE file for details.